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Nhóm Tin-sinh học

  1. Tran, D.H., Satou, K., Ho, T.B., Pham, T.H. (2010). Computational Discovery of miR-TF Regulatory Modules in Human Genome, Bioinformation, 4(8), 371-377

  2. Le, N.T., Ho, T.B., Tran, D.H. (2009). Characterizing nucleosome dynamics from genomic and epigenetic information using rule induction learning, BMC Genomics, 10(Suppl 3):S27

  3. Ho, T.B., Takabayashi, K., Pham, T.H. , Nguyen, T.P., Kawasaki, S., Tran, D.H. (2009). Towards service-oriented knowledge discovery in biomedicine research, International Workshop on Third Generation Data Mining, ECML/PKDD 2009, 7-11 September, Slovenia.

  4. Le, N.T., Tran, D.H., Ho, T.B. (2008). Combinatorial effects of histone modifications and DNA sequences on nucleosome dynamics, Workshop on Knowledge, Language, and Learning in Bioinformatics (KLLBI 2008), in conjunction with Tenth Pacific Rim International Conference on Artificial Intelligence (PRICAI-08), December 16-19, Hanoi.

  5. Tran, D.H., Ho, T.B., Satou, K., Pham, T.H. (2008). A computational method for classifying and analyzing tumor samples using microRNA expression profiles, 3rd International Conference on Knowledge, Information and Creativity Support Systems (KICSS 2008), December 22-23, Hanoi.

  6. Tran, D.H., Satou, K., Ho, T.B. (2008). Finding MicroRNA Regulatory Modules in Human Genome Using Rule Induction, BMC Bioinformatics, 9(Suppl 12):S5.

  7. Tran, D.H., Pham, T.H., Satou, K., Ho, T.B. (2008). Prediction of Human MicroRNA Hairpin Using Only Positive Sample Learning, Journal of Biomedical Science and Engineering (JBiSE), Vol. 1(2), 141-146, Scientific Research Publishing.

  8. Tran, D.H., Satou, K., Ho, T.B. (2008). Finding microRNA-mRNA modules based on rule induction, The 12th Annual International Conference o Research in Computational Molecular Biology (RECOMB 2008), Singapore, P134.

    9.

  9. Pham, T.H., Ho, T.B., (2007) A Hyper-heuristic for Descriptive Rule Induction, International Journal of Data Warehousing and Mining, Vol. 3, No. 1, 54-66.

  10. Pham, T.H., Ho, T.B., Tran, D.H., Satou, K. (2007). Prediction of Histone Modifications in DNA Sequences, IEEE 7th International Conference on Bioinformatics and Bioengineering (BIBE 2007), Cambridge-Boston, Massachusetts, October 14-17, 959-966.

  11. Tran, D.H, Pham, T.H., Satou, K., Ho, T.B. (2006). Conditional Random Fields for Predicting and Analyzing Histone Occupancy, Acetylation and Methylation Areas in DNA Sequences, 4th European Workshop on Evolutionary Computation and Machine Learning in Bioinformatics (EvoBIO 2006), Budapest, 10-12 April, Lecture Notes in Computer Science, LNCS 3907, Springer, 221-230.

  12. Pham, T.H., Tran, D.H., Ho, T.B., Satou, K., Valiente, G. (2005). Qualitatively Predicting Acetylation and Methylation Areas in DNA Sequences, Genome Informatics 2005, Yokohama, Universal Academic Press, Vol. 15, No. 2.

  13. Pham, T.H., Clemente, J.C., Satou, K., Ho, T.B. (2005), Computational Discovery of Transcriptional Regulatory Rules, Bioinformatics, Vol.21 Suppl.2, ii101-ii107.

  14. Pham, T.H., Satou, K., Ho, T.B. (2005), Support Vector Machines for Prediction and Analysis of Beta and Gamma-turns in Proteins, Journal of Bioinformatics and Computational Biology (JBCB), vol 3 (2) 343-358.

  15. Pham, T.H., Clemente, J.C., Satou, K., Ho, T.B. (2005), Rule Evaluation Heuristics for Knowledge Discovery, Workshop on Knowledge Discovery and Data Management in Biomedical Science (KDDMBS-PAKDD), Hanoi-Vietnam, pp.29-44.

  16. Pham, T.H., Satou, K., Ho, T.B. (2004), Mining Yeast Transcriptional Regulatory Modules from Factor DNA-binding Sites and Gene Expression Data, Genome Informatics, vol. 15(2), 287-295.

  17. Pham, T.H., Satou, K., Ho, T.B. (2004), Computational Discovery of Transcriptional Regulatory Modules from Factor DNA Sequences and Gene Expression Data, 5th International Symposium on Knowledge and Systems Science (KSS’04), pp.184-189, 2004

  18. Pham, T.H., Satou, K., Ho, T.B. (2003), Prediction and Analysis of Beta-turns in Proteins by Support Vector Machine, Genome Informatics, vol. 14, 196-205.

Nhóm Hóa lượng tử

  1. Theoretical study of the interaction between monohalogenated ethylenes and water, Hue Minh Thi Nguyen, Pham Ngoc Diep and Thérèse Zeegers-Huyskens, J. Molecular Structure: Theochem, 897, 48-54 (2009).

  2. Ab Initio Study on the Oxidation of NCN by OH: Prediction of the Individual and  Total Rate Constants, R. S. Zhu, Hue Minh Thi Nguyen, and M. C. Lin, Journal of Physical Chemistry A, 113, 298 – 304 (2009)

  3. Kinetic study of the 2-Naphthyl (C10H7) radical reaction with C2H2, J. Park, Hue M. T. Nguyen, Z. F. Xu and M. C. Lin, Journal of Physical Chemistry A; 113 (44), 12199 – 12206, (2009)

  4. Ab Initio Study on the Oxidation of NCN by OH: Prediction of the Individual and Total Rate Constants. R. S. Zhu, Hue Minh Thi Nguyen,  and M. C. Lin. Journal of Physical Chemistry A, 113, 298 – 304 (2009).

  5. Theoretical study of the interaction between monohalogenated ethylenes and water. Hue Minh Thi Nguyen, Pham Ngoc Diep and Thérèse Zeegers-Huyskens. J. Molecular Structure: Theochem, 897, 48-54 (2009).

  6. Heats of formation of the Criegee formaldehyde oxide and dioxirane. Minh Tho Nguyen, Thanh Lam Nguyen, Vu Thi Ngan, Hue Minh Thi Nguyen. Chemical Physics Letters, 448, 183-188 (2007).

  7. Theoretical study of the blue-shifting hydrogen bonds between CH2X2 and CHX3 (X = F, Cl, Br) and hydrogen peroxide. Hue Minh Thi Nguyen, Jozef Peeters, and Thérèse Zeegers-Huyskens. J. Molecular Structure: Theochem, 792-793, 16-22 (2006).

  8. Quantum chemical study of hydrogen abstraction reactions of the ethynyl radical with hydrogen compounds (C2H + HX). Hue Minh Thi Nguyen,  Asit K. Chandra, Shaun A. Carl, and Minh Tho Nguyen. J. Molecular Structure: Theochem, 732, 219 (2005)

  9. Effect of protonation on the electronic structure of 1,3,5-trimethylenebenzene triradical. Hue Minh Thi Nguyen, Tran Thanh Hue, and Minh Tho Nguyen. Chemical Physics Letters, 411, 450-456 (2005)

  10. Chemical Bonding and Energetics of the 1,3,5-Tridehydrobenzene Triradical and Its Ions. Hue Minh Thi Nguyen,  Tibor Höltzl, G. Gopakumar, Tamas Veszpremi, Jozef Peeters and Minh Tho Nguyen. Chem. Phys., 316, 125 (2005)

  11. Quenching of the magnetic moment of a transition metal dopant in silver clusters Ewald Janssens, Sven Neukermans, Hue Minh Thi Nguyen, Minh Tho Nguyen, Peter Lievens. Physical Reviews Letters, 94, 113401 (2005)

  12. Electronic Structure of 1,3,5-Triaminobenzene Trication, 1,3,5-Triimidyl­benzene and Related Triradicals: Doublet versus Quartet Ground State. Hue Minh Thi Nguyen, Antara Dutta, Keiji Morokuma, and Minh Tho Nguyen. Journal of Chemical Physics, 122, 154308 (2005)

  13. Pulsed laser photolysis and quantum chemical – statistical rate study of the reaction of the Ethynyl radical with water vapor. Shaun A. Carl, Hue Minh Thi Nguyen, Rehab Ibrahim M. Elsamra, Minh Tho Nguyen, and Jozef Peeters. Journal of Chemical Physics, 122, 114307 (2005)

  14. Quantum chemical study of the electronic structure of the 1-methylene-3,5-didehydrobenzene triradical (C7H5). Hue Minh Thi Nguyen, Tran Thanh Hue, Jozef Peeters and Minh Tho Nguyen. Chemical Physics Letters, 404, 150-155 (2005)

  15. The 5-Dehydro-m-Xylylene Triradical and Its Nitrogen and Phosphorus Derivatives: Open-Shell  Doublet  versus  Quartet  Ground  State. Hue Minh Thi Nguyen, G. Gopakumar, Jozef Peeters, and Minh Tho Nguyen, Journal of Physical Chemistry A, 108, 8411-8418 (2004)

  16. Theoretical Study of the Interaction between Methylfluoride, Methylchloride and Methylbromide with Hydrogen Peroxide. Hue Minh Thi Nguyen, Minh Tho Nguyen, Jozef Peeters, and Thérèse Zeegers-Huyskens. Journal of Physical Chemistry A 108 (50) 11101-11108 (2004)

  17. Theoretical study of the reaction of the Ethynyl radical with Ammonia (HCºC + NH3): Hydrogen abstraction versus condensation. Hue Minh Thi Nguyen,  Shaun A. Carl, Jozef  Peeters, and Minh Tho Nguyen. Physical Chemistry-Chemical Physics, 6, 4111-4117 (2004)

  18. Direct ab initio Dynamics Studies of the Reactions of HNO with H and OH Radicals. Hue Minh Thi Nguyen, Shaowen Zhang, Jozef Peeters, Thanh N. Truong, Minh Tho Nguyen. Chemical Physics Letters, 388, 94-99 (2004)

  19. No barrier for the gas-phase C2H + NH3 reaction Shaun A. Carl, Rehab M. Elsamra, Raviraj M. Kulkarni, Hue Minh Thi Nguyen, and Jozef Peeters. Journal of Physical Chemistry A 108 (17) 3695-3698 (2004)

  20. Use of DFT-based Reactivity Descriptors for Rationalizing Radical Reactions: A Critical Analysis
    Hue Minh Thi Nguyen, Asit K. Chandra, Jozef  Peeters, and Minh Tho Nguyen. Journal of Physical Chemistry A 108 (3) 484-489 (2004)

  21. Theoretical and Experimental study of the reaction of the Ethynyl radical with Nitrogen Dioxide (HCºC + NO2) Shaun A. Carl, Hue Minh Thi Nguyen,  Minh Tho Nguyen,  and Jozef Peeters. Journal of Chemical Physics 118 (24) 10996-11008 (2003)

  22. Experimental and Theoretical Study of the C2H + H2 Reaction. Jozef Peeters, Benny Ceursters, Hue Minh Thi Nguyen and Minh Tho Nguyen. Journal of Chemical Physics, 116, 3700-3709, (2002)

  23. Theoretical Study of the Ring-opening of Phosphirane and Silirane: Contrasting Mechanism of Hydrogen Migration Minh Tho Nguyen, Hue Minh Thi Nguyen, Nguyen Nguyen Pham Tran and Tamas Veszpremi Journal of the Chemical Society Perkin Transaction 2, 766-773, (2001)

  24. Experimental and Theoretical Study of the Reaction of the Ethynyl Radical with Acetylene (HCC + HCCH) Benny Ceursters, Hue Minh Thi Nguyen, Jozef Peeters, and Minh Tho Nguyen, Chemical Physics, 262 (2-3), 243-252 (2000)

  25. Experimental and Theoretical Study of the Reaction of the Ethynyl Radical with Methane (HCC + CH4) Benny Ceusters, Hue Minh Thi Nguyen, Jozef  Peeters, and  Minh Tho Nguyen, Chemical Physics Letters, 329 (5-6), 412-420, (2000)

  26. The reaction of C2H radicals with C2H6: Absolute Rate Coefficient Measurement for T=295-800 K, and Quantum Chemical Study of the Molecular Mechanism B. Ceursters, Hue Minh Thi Nguyen, M. T. Nguyen, J. Peeters, and L. Vereecken Physical Chemistry-Chemical Physics, 3, 3070-3074, (2001)

  27. Triplet-singlet Energy gaps in iodo-carbenes: Remarkable discrepancy between  Experiment and Theory Balazs Hajgato, Hue Minh Thi Nguyen, Tamas Veszpremi and Minh Tho Nguyen; Physical Chemistry-Chemical Physics, 2 (22), 5041-5045, (2000)

  28. Electronic structure Calculations on the Reaction of Vinyl Radical and Nitric Oxide. Raman Sumathy, Hue Minh Thi Nguyen, Jozef Peeters, and Minh Tho Nguyen. Journal of Physical Chemistry A, 104, 1905-1914 (2000)

  29. Mechanism and Kinetics of the Reaction of Acetylene and Nitric Oxide. Hue Minh Thi Nguyen, Raman Sumathy, and Minh Tho Nguyen. Journal of Physical Chemistry A, 103, 5015-5022 (1999)

  30. On the Heats of Formation of Methylketene, Dimethylketene and Related Cations. Minh Tho Nguyen and Hue Minh Thi Nguyen. Chemical Physics Letters, 300, 346-350 (1999)